PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0107.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 420aa    MW: 47311.1 Da    PI: 9.1689
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.3e-321061982103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+++++ d++++ li w + +nsf+v+d+ ef+++vLp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ 
  Kaladp0031s0107.1.p 106 FVMKTFRMVCDPATDALICWGRGSNSFLVFDPLEFSHRVLPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQV 186
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k++
  Kaladp0031s0107.1.p 187 HLLRNIVRRKHS 198
                          ********9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-49102195IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.5E-35103195IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.86E-33103195IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-28106195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16106129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16144156IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340145169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16157169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MIRPIISYET RTIASRWIEK SPPPPKNIKR TPTGTTRLRI FNLTRPHADT LHSSTVHLPS  60
QYINSVKTQP RIAPPRPDQR SRTTREQLAE RMDQAVMDGS DTIAPFVMKT FRMVCDPATD  120
ALICWGRGSN SFLVFDPLEF SHRVLPVYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEW  180
FLRGQVHLLR NIVRRKHSRA SSSASRVVEE MCGDEDQDIL VEISKLKEEQ RSIEMEIQDM  240
TRRLDATERR PQQMMAFLHR AVEDPEIVPR MMLEKDKHQQ QHSQQRRRVI SDSPDKKRRL  300
LFNATSSSSS SSMATTIKTE DEDDANLTTG SSPDQPGWCQ SPQLSSSSAW LNNPLGSIHP  360
AARAGGSGTP SAPGSAAYGG DKSSSDRYGG AFGCIQDDAD LGANDPTPPY PFSLFRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-269719511120Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287427.11e-100PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV522e-85HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0N7DKH11e-96A0A0N7DKH1_9R
STRINGVIT_11s0016g03940.t012e-94(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-80heat shock transcription factor C1